PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g067460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 136aa    MW: 16020.2 Da    PI: 8.998
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g067460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.62.5e-521135241374
            GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                     ++e+ea+h+++sFl+rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva+e +er++rh+++e W+e+++++GF +vp++++a +
  Csa14g067460.1   1 MAEREANHGDHSFLNRFSEAVDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEIFDVVAAEARERKQRHRRFEIWEEMMKRFGFVNVPIGSFALS 95 
                     68********************************************************************************************* PP

            GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     qaklllr ++ s+gy+++  ++sl+lgW++r L+svS+W+
  Csa14g067460.1  96 QAKLLLRLHYpSEGYNLQFLNNSLFLGWQNRLLFSVSSWK 135
                     ***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.3E-501135IPR005202Transcription factor GRAS
PROSITE profilePS5098521.1131114IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MAEREANHGD HSFLNRFSEA VDHYVAIFDS LEATLPPNSR ERLTLEQRWF GKEIFDVVAA  60
EARERKQRHR RFEIWEEMMK RFGFVNVPIG SFALSQAKLL LRLHYPSEGY NLQFLNNSLF  120
LGWQNRLLFS VSSWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-141135239375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023280.0AC002328.2 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence.
GenBankAC0052230.0AC005223.1 Arabidopsis thaliana chromosome I BAC T5A14, complete sequence.
GenBankAY1964820.0AY196482.1 Arabidopsis thaliana lateral suppressor (LAS) mRNA, complete cds.
GenBankBT0265190.0BT026519.1 Arabidopsis thaliana At1g55580 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480099.12e-94PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-91SCL18_ARATH; Scarecrow-like protein 18
TrEMBLD7KMZ61e-90D7KMZ6_ARALL; Putative uncharacterized protein
STRINGscaffold_105352.14e-90(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.16e-93GRAS family protein